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Home » Recipes » Breakfast & Brunch

Apple Cider Muffins

By: Kathryn Doherty | Last Updated: Mar 11, 2025 | Published: Sep 16, 2021
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Apple cider muffins are soft, sweet and bursting with apple flavor. They’re also whole grain and naturally sweetened for a healthy fall breakfast or snack.A cooling rack with apple cider muffins and a couple of apple slices

You know we love our healthy muffin recipes in this house.

My kids have been muffin munchkins since they were toddlers and we are showing no signs of slowing down. (They are currently 8 and 10.)

They eat spinach banana mini muffins and whole wheat pumpkin muffins all the time for lunch.

We have whole wheat peanut butter banana muffins and healthy blueberry muffins for breakfast and also for school lunches on the regular.

And my healthy chocolate chip muffins are also a long-time favorite, from even before we had kids.

Today I’m sharing a fall favorite with these apple cider muffins.

Close up of baked apple muffins in a muffin tin

They are soft, perfectly sweet and bursting with apple flavor from the apple cider and chopped apples in the mix.

They’ve also got a rustic, homey sort of feel to them with the oats and apple chunks running throughout the muffins. (Plus some optional walnuts if you’d like to add those.)

And bonus, they’re healthy! These are whole grain and naturally sweetened, so you can feel good about reaching for one any time of day.

Because they work for breakfast, but also for an anytime snack or for packing in a school lunch or grabbing for an on-the-go afternoon.

Such warm, cozy delicious flavors. They are perfect for healthy fall baking!

OK, let’s get to making some.

A blue mixing bowl with a flour and oat dry mixture A blue bowl with a muffin batter being assembled

A blue bowl with muffin batter and chopped apples being added Whole grain apple oat muffins in liners in a muffin tin before being baked

Now, I’ve got some notes and substitutions coming up below on how to make apple cider muffins. Just tryin’ to be helpful.

If you want to jump on down to the recipe, simply scroll right on through the rest of the text. The recipe card is near the bottom of the page, above the comments section.

Notes on making apple cider muffins:

  • Flour: I use white whole wheat flour, but you could easily substitute the same amount of all-purpose flour. Or use a mix of all-purpose and whole wheat flour.
  • Oats: You’ll need regular old-fashioned rolled oats for this recipe. You could also use quick oats, but I don’t recommend substituting steel cut oats.
  • Canola oil: You could also try substituting melted coconut oil or butter if you prefer.
  • Apples: One large apple should be enough to yield 1 cup of chopped. Be sure to chop them small so you don’t have huge chunks of apple in your muffins. Any good baking apple, like Gala or Red Delicious, Braeburn, Jonagolds, Melrose, Rome and even Honey Crisp will work.
  • Walnuts: These are optional but a good flavor add-in for these muffins.

Overhead of a muffin tin of apple cider muffins after being baked

Need this to be vegan? I haven’t tested it this way, but I think it would work. Here’s what I recommend.

How to make vegan apple cider muffins:

– Substitute two flax eggs for the eggs.

– Choose maple syrup or agave syrup instead of honey for the sweetener.

Now, we are going healthy with these muffins as is.

However, if you wanted to spruce them up a bit or if you’re serving them for a special snack or party, I think a cream cheese drizzle over the top would be divine!

Overhead shot of a cooling rack with apple cider muffins and sliced apples and a sprinkling of oats A hand holding a healthy apple muffin off of a small white plate with a cooling rack of muffins in the background

I do that with my carrot cake muffins sometimes and it’s so yummy!

Here’s a quick recipe for it if you’d like to add some to your muffins.

How to make healthy cream cheese frosting:

- Combine 4 oz. plain cream cheese, 2 tablespoons plain nonfat Greek yogurt, 2 tablespoons maple syrup and ½ teaspoon vanilla extract in a bowl until smooth and well mixed. Taste and add up to an extra tablespoon of maple syrup if desired.

- For a thinner frosting to drizzle, add a splash or two of your milk of choice.

You could also serve these with a smear of butter or peanut butter.

But more often than not, we enjoy them on their own. They’re plenty tasty!

OK, let’s talk about what to do with the extras.

I love making muffins and having the leftovers on hand for later in the week - or in the weeks to come.

Muffins freeze great, and it can be such a relief to have something like this to pull out of the freezer in a pinch.

A hand about to pick up a whole grain apple cider muffin from a cooling rack

How to store apple cider muffins:

– These muffins will keep, covered, at room temperature for 3-4 days. After that, you can move them to the refrigerator, where they will keep for another 2-3 days.

– You can also freeze the extras. Let the muffins cool completely. Place them in a freezer-safe ziptop bag (that’s labeled!) and freeze for up to 6 months.

– I like to wrap them individually in aluminum foil before putting them into the bag. It adds an extra layer of protection from freezer burn and ice accumulation.

– To thaw, just place one or more muffins in the refrigerator overnight. Serve cold from the fridge or warm in the microwave for about 15-20 seconds.

– You can also warm a muffin in the microwave straight from the freezer in a pinch. Be sure to unwrap it from the foil. Start with 45 seconds and add time (and possibly turn it upside down) as needed.

Alright, I think you are all set! If you do have other questions, as always, let me know in the comments below. I’m happy to help!

I hope you give these a try, whether you want to enjoy them at breakfast, for an afternoon snack or to send as part of a school lunch.

Enjoy!

XO,

Kathryn

A dozen apple muffins in a muffin tin after baking
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Apple Cider Muffins

Apple cider muffins are soft, sweet and bursting with apple flavor. They’re also whole grain and naturally sweetened for a healthy fall breakfast or snack.
Prep Time10 minutes mins
Cook Time15 minutes mins
Total Time25 minutes mins
Yield: 12 muffins

Ingredients

  • 1 ½ cups white whole wheat flour
  • 1 cup old-fashioned oats
  • 2 teaspoons cinnamon
  • 1 teaspoon baking soda
  • ¼ teaspoon baking powder
  • ½ teaspoon salt
  • 2 large eggs
  • ½ cup apple cider
  • ½ cup honey
  • ¼ cup canola oil
  • 1 teaspoon vanilla
  • 1 cup small chopped apples
  • ¼ cup finely chopped walnuts (optional)

Instructions

  • Preheat the oven to 350 degrees Fahrenheit. Line a 12-cup muffin tin with paper liners and spray with cooking spray.
  • In a large bowl, combine the flour, oats, cinnamon, baking soda, baking powder and salt and stir well.
  • Make a well in the center of the bowl and add the eggs, apple cider, honey, canola oil and vanilla. Mix the wet ingredients together a little and then incorporate into the dry ingredients. Stir until just combined and no streaks of flour remain. Fold in the chopped apples (and walnuts, if using).
  • Divide the mixture into the muffin tins, filling each one almost full.
  • Bake at 350 for 15-18 minutes, until a toothpick inserted in the center comes out clean.
  • Let cool for a few minutes before handling. Enjoy warm or cool completely and store for later.

Notes

Flour: I use white whole wheat flour, but you could easily substitute the same amount of all-purpose flour. Or use a mix of all-purpose and whole wheat flour.
Oats: You’ll need regular old-fashioned rolled oats for this recipe. You could also use quick oats, but I don’t recommend substituting steel cut oats.
Canola oil: You could also try substituting melted coconut oil or butter if you prefer.
Apples: One large apple should be enough to yield 1 cup of chopped. Be sure to chop them small so you don’t have huge chunks of apple in your muffins. Any good baking apple, like Gala or Red Delicious, Braeburn, Jonagolds, Melrose, Rome and even Honey Crisp will work.
Walnuts: These are optional but a good flavor add-in for these muffins.
Vegan: To make these muffins vegan, you can try substituting 2 flax eggs for the eggs and using maple syrup or agave syrup instead of honey.
How to make healthy cream cheese frosting:
  1. Combine 4 oz. plain cream cheese, 2 tablespoons plain nonfat Greek yogurt, 2 tablespoons maple syrup and ½ teaspoon vanilla extract in a bowl until smooth and well mixed. Taste and add up to an extra tablespoon of maple syrup if desired.
  2. For a thinner frosting to drizzle, add a splash or two of your milk of choice.
How to store muffins:
  • These muffins will keep, covered, at room temperature for 3-4 days. After that, you can move them to the refrigerator, where they will keep for another 2-3 days.
  • You can also freeze the extras. Let the muffins cool completely. Place them in a freezer-safe ziptop bag (that’s labeled!) and freeze for up to 6 months. I like to wrap them individually in aluminum foil before putting them into the bag. It adds an extra layer of protection.
  • To thaw, just place one or more muffins in the refrigerator overnight. Serve cold from the fridge or warm in the microwave for about 15-20 seconds. Or warm directly from the freezer. Start with 45 seconds and add time (and possibly turn it upside down) as needed.

Nutrition

Serving: 1serving | Calories: 184kcal | Carbohydrates: 30g | Protein: 4g | Fat: 6g | Saturated Fat: 1g | Polyunsaturated Fat: 5g | Cholesterol: 31mg | Sodium: 217mg | Fiber: 3g | Sugar: 14g
Tried this recipe?Leave a comment below or follow me on Instagram @familyfoodonthetable and tag me in your photo!
A hand about to pick up a whole grain apple cider muffin from a cooling rack with a text overlay on the photo

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Comments

  1. Connie

    October 12, 2023 at 10:32 am

    It seems to me that the baking powder should be 1 teaspoon and the baking soda one quarter teaspoon instead of the other way around. Did you mean to say it the way you did?

    Reply
    • Kathryn Doherty

      October 13, 2023 at 7:27 am

      What's written in the recipe card is correct. Would love to hear if you try them!

      Reply

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Hi there! I’m Kathryn Doherty, a cookbook author, mom of two, and devoted food and home cooking nut. I’ve got lots of easy recipes to help you get delicious food on the table for your family!

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