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Home » Recipes » Toddler and Kid Food

Veggie Mac and Cheese Muffins

By: Kathryn Doherty | Last Updated: Mar 6, 2025 | Published: Feb 27, 2017
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Veggie mac and cheese muffins have 3 vegetables and 3 kinds of cheese, plus a crunchy topping, and are a great way to get kids to eat their vegetables!

A small white plate with mac and cheese muffins stacked on it and a glass of milk in the background.


 

Hiya friends!

Today I'm bringing back a recipe I posted on this blog before I'd told anyone I had a blog. It was my hidden little part of the Internet and I was just trying to figure out all the ins and outs of websites and blogging before I let the world in on my secret.

It was also before I knew anything about how to take pictures of food. I'm still learning and have a long way to go, but I don't shudder at the majority of my photography anymore, so that's progress.

And so when I made a batch of these veggie mac and cheese muffins recently, I knew I needed to redo the photos and republish this recipe.

Cause it's a really good one and deserves to come out of hiding!

Macaroni and cheese
A pot with a mac and cheese mixture with shredded veggies stirred in.

J, my 3-year-old, has been begging me for mac and cheese recently. He's a bit crazed. And while I love to experiment and do things like my kale and butternut squash mac and cheese, these individual muffins are what he knows best.

He loves ALL the cheesy goodness -- there are THREE kinds of cheese in these muffins -- and I love ALL the veggie goodness -- there are THREE kinds of vegetables, too!

That’s a winner in my book! And the kiddos gobble them down. J had 3 that night and M, my 5-year-old, chowed down on 2 of these.

Can't blame them - look at that cheesy, golden brown deliciousness!

A muffin tin with mac and cheese in each cup topped with a breadcrumb mixture
Close up of a muffin tin with mac and cheese in each cup topped with a breadcrumb mixture

So let’s get cooking.

Now, I’ve got some notes, tips and substitutions coming up below on how to make veggie mac and cheese muffins. Just tryin’ to be helpful.

If you want to jump on down to the recipe, simply scroll through the rest of the text. The recipe card is near the bottom of the page, above the comments section.

Ingredient Notes:

  • Cooking liquid: I cook my macaroni pasta in a half milk-half water mixture when I make these mac and cheese muffins to add extra creamy richness. Just heat up your milk and water on the stove but be sure to watch it VERY carefully - once it boils, it can boil over in a second and that's not fun. You can also just cook the pasta in water the usual way.
  • Pasta: I love using a whole wheat or whole grain pasta when I can find it, but regular is of course OK too. I've used elbow macaroni but small or medium shells or another small size pasta would work too.
  • Cheese: I use a combination of cheddar and mozzarella cheese in the muffins, but you could use all cheddar if you want. Or get a little more adventurous and try Monterey Jack or Fontina. You could add a little gouda to some of the mix for the grownups. Play with it!
  • Veggies: I use a combination of broccoli, cauliflower and carrots for the veggie puree. It’s often found all together in one bag in the freezer section as “California mix.” I cook it in a small amount of water on the stove for about 10 minutes, then puree it using an immersion blender.

You can use any combination of veggies you think your kids will like.

Carrots give it a bit of sweetness and also make the color look like it’s extra cheesy. Cauliflower is pretty mild and well-hidden. Broccoli, spinach and peas are great options and will bring a nice hint of green.

You can also serve this mac & cheese straight from the stove if you don’t want to bake it as muffins. I have done that.

But those crunchy breadcrumbs on top are awfully irresistible and worth the extra step for me!

A hand holding up a veggie mac and cheese muffin from a plate.

Last thing, let's talk about how to store leftovers.

Once cooled, these mac and cheese muffins can be stored in a covered container in the refrigerator for up to 4-5 days. Reheat in the microwave until hot.

They also freeze great! Let cool, then place in a freezer-safe ziplock bag. Label and date it then freeze for up to 3-4 months. Let thaw overnight or pop one straight in the microwave and reheat until warmed through.

Oh, and if you are looking for a pairing for your littlest one, check out these baby meatballs. Or make meatloaf muffins if your kids love anything in muffin form like mine do!

I hope you give these veggie mac and cheese muffins a try - they are a huge hit in our house for the kids and the grown-ups. And have been for years.

Have a wonderful week!

XO,

Kathryn

A small white plate with a stack of veggie mac and cheese muffins with a breadcrumb topping on each.
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4.10 from 30 votes

Veggie Mac and Cheese Muffins

Veggie mac and cheese muffins have 3 vegetables and 3 kinds of cheese, plus a crunchy topping, and are a great way to get kids to eat their vegetables!
Prep Time30 minutes mins
Cook Time15 minutes mins
Total Time45 minutes mins
Yield: 16 muffins

Ingredients

  • 2 cups macaroni or other small pasta
  • 1 heaping cup cheddar cheese, shredded
  • 1 heaping cup mozzarella cheese, shredded
  • 1 cup pureed vegetables, (see notes)
  • ½ teaspoon kosher salt
  • ⅓ cup grated Parmesan cheese
  • ⅓ cup plain breadcrumbs

Instructions

  • Preheat the oven to 400. Spray two muffin tins with cooking spray and set aside.
  • Cook your pasta according to package directions. (See notes.) Drain most of the liquid from the pasta, reserving about ⅔ of a cup. Return the cooked pasta to the pan.
  • Stir the cheddar and mozzarella cheeses into the pasta until they are melted. Stir in the pureed vegetables and salt until mixed and warmed through. Add splashes of pasta water, if needed, to get everything to come together.
  • In a small bowl, mix the Parmesan cheese and breadcrumbs together until combined.
  • Put the mac and cheese mixture into a muffin tin, filling each up all the way to the top and pressing the pasta down to help it all stick together in the muffin cups.
  • Sprinkle the top of each muffin with about a tablespoon of the Parmesan-breadcrumb mixture.
  • Bake at 400 for 15-20 minutes, until the mac and cheese is bubbly and the tops are slightly browned. Serve warm and enjoy!

Notes

Cooking liquid: I cook my macaroni pasta in a half milk-half water mixture when I make these mac and cheese muffins to add extra creamy richness. Just heat up your milk and water on the stove but be sure to watch it VERY carefully - once it boils, it can boil over in a second and that's not fun. You can also just cook the pasta in water the usual way.
Pasta: I love using a whole wheat or whole grain pasta when I can find it, but regular is of course OK too. I've used elbow macaroni but small or medium shells or another small size pasta would work too.
Cheese: I use a combination of cheddar and mozzarella cheese in the muffins, but you could use all cheddar if you want. Or get a little more adventurous and try Monterey Jack or Fontina. You could add a little gouda to some of the mix for the grownups. Play with it!
Veggies: I use a combination of broccoli, cauliflower and carrots for the veggie puree. It’s often found all together in one bag in the freezer section as “California mix.” I cook it in a small amount of water on the stove for about 10 minutes, then puree it using an immersion blender. You can use any kind of veggie combination you want. See post for ideas and details.
Storing: Once cooled, these mac and cheese muffins can be stored in a covered container in the refrigerator for up to 4-5 days. Reheat in the microwave until hot.
Freezing: They also freeze great! Let cool, then place in a freezer-safe ziplock bag. Label and date it then freeze for up to 3-4 months. Let thaw overnight or pop one straight in the microwave and reheat until warmed through.

Nutrition

Serving: 1muffin | Calories: 111kcal | Carbohydrates: 11g | Protein: 6g | Fat: 5g | Saturated Fat: 3g | Polyunsaturated Fat: 2g | Cholesterol: 14mg | Sodium: 214mg | Fiber: 1g | Sugar: 1g
Tried this recipe?Leave a comment below or follow me on Instagram @familyfoodonthetable and tag me in your photo!

(Note: This post has been updated with new photographs and refreshed text. It was originally posted in May 2015.)

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Reader Interactions

Comments

  1. Cheyanne @ No Spoon Necessary

    February 27, 2017 at 7:55 am

    5 stars
    Oh I'm so glad you decided to reshoot and republish these mac n' cheesy muffins, girlfriend, because I totally did not see these! And these NEED to be seen. And devoured! Love that you used three types of cheese, because the more the better where that is concerned! And I love that you snuck in not one, but THREE veggies!! Wahoo! So those veggies totally make these muffins 'diet food' then, right? 🙂 At least that's what I'm going to tell myself when I eat the whole pan. Hehe. Cheers, girlie! Xo

    Reply
  2. Cheyanne @ No Spoon Necessary

    February 27, 2017 at 7:57 am

    Oops! Aaaaand, Pinned!

    Reply
    • Kathryn

      February 28, 2017 at 7:25 pm

      Haha, no one had seen these 😉 Glad to dust them off and bring them back! XO

      Reply
  3. Dawn @ Girl Heart Food

    February 27, 2017 at 12:16 pm

    You're so sneaky getting those veggies in there! These look so cute. Love the little portion size, but you know I'm totally eating, like, 3 of these, lol 😀 These would be so lovely for parties too. One of these in one hand and drink in other 😉 Pinned! Happy Monday! XO

    Reply
    • Kathryn

      February 28, 2017 at 7:26 pm

      Haha, my 3-year-old eats 3 of these! And it is sneaky but I always tell them they're eating veggies so they know they like them! Loving the idea of snacking on these with a drink in the other hand - love your style girl 😉 XO

      Reply
  4. cakespy

    February 28, 2017 at 7:31 am

    These are undoubtedly the best muffins I've ever seen in my life.

    Reply
    • Kathryn

      February 28, 2017 at 7:27 pm

      Aw, thanks so much! I hope you give them a try!

      Reply
  5. Megan @ MegUnprocessed

    February 28, 2017 at 8:33 pm

    Great idea on incorporating vegetables in this classic meal! This is so creative!

    Reply
    • Kathryn

      March 01, 2017 at 8:31 pm

      Thanks so much Megan! Sometimes I have to get creative to help get those veggies in!

      Reply
  6. Lauren Grant | Zestful Kitchen

    February 28, 2017 at 10:46 pm

    Love how you use pureed veggies in here! Such a great idea!

    Reply
    • Kathryn

      March 01, 2017 at 8:33 pm

      Thanks Lauren! They just blend and melt right in!

      Reply
  7. Jen @ Just Take One Bite

    October 04, 2017 at 1:00 pm

    I made these for my boys for their school lunch. They loved them and didn't suspect that there were veggies hidden in there! Thanks for the great recipe!

    Reply
    • Kathryn

      October 04, 2017 at 7:30 pm

      I'm so happy to hear these were a hit for you Jen! Thanks for sharing! 😊

      Reply
  8. Crissy Rubin

    September 22, 2018 at 6:42 pm

    If I make this into a big dish instead of into the muffins how long would I have to bake it? Is the time different?

    Reply
    • Kathryn

      September 24, 2018 at 9:23 am

      Hi Crissy, I think for a large casserole of this, it'll take about 20 minutes baking time (so not much more). I hope that helps!

      Reply
  9. Richard

    April 01, 2019 at 6:38 pm

    Kathryn, I had a question about reheating after storage. Is it better to use an Oven, and if so how long should use put them in for, or is using a Microwave acceptable?

    Reply
    • Kathryn

      April 02, 2019 at 11:12 am

      Hi! I just pop 1-2 in the microwave and reheat them that way. It's quicker, easier and gets them nice and bubbly hot again. I put them on a paper towel to catch any extra moisture from thawing and start with 1 minute and then go from there. Hope that helps!

      Reply
4.10 from 30 votes (29 ratings without comment)

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Hi there! I’m Kathryn Doherty, a cookbook author, mom of two, and devoted food and home cooking nut. I’ve got lots of easy recipes to help you get delicious food on the table for your family!

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