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Home » Recipes » Breakfast & Brunch

Peanut Butter Pumpkin Muffins

By: Kathryn Doherty | Last Updated: Mar 10, 2025 | Published: Sep 7, 2015
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Whole wheat, naturally sweetened peanut butter pumpkin muffins - with optional chocolate chips - are a perfect healthy breakfast or snack.

Peanut butter pumpkin muffins, one with chocolate chips, on a white plate.


 

Happy Labor Day!

Also known as the start of fall. To me, at least.

I know technically, fall doesn’t start for a couple more weeks, but this weekend is always the transition one for me.

We soak up the last bits of summer and then start looking ahead to fall.

Fall might be my favorite season. It's just cozy and comforting.

It always feels like a new beginning, I suppose because it’s back to school time. It feels like a time of reflection, too… something about all those changing colors, the transition from a time of growing to a time of harvest and storing away, nature preparing for a winter hibernation.

Bring it on.

Unwrapped baked pumpkin peanut butter muffins on a counter.

And bring on ALL things pumpkin.

We are serious pumpkin people here. My pantry is stocked with a minimum of two cans of pumpkin ALL year long.

I am never, ever without pumpkin.

And my kids must have peanut butter.

*Almost* daily.

We have peanut butter pumpkin overnight oatmeal jars at least once a week for breakfast, peanut or almond butter sandwiches once a week for lunch, peanut butter and banana “sandwiches” weekly for snack, and there’s usually raisin bread with peanut butter for breakfast one weekend morning.

It’s a lot of peanut butter.

Six pumpkin muffins with peanut butter unwrapped and in two rows on a counter.

And since we love peanut butter with our pumpkin, these muffins are a big hit at my house.

They’re great for breakfast or lunch (and you can sub almond butter if you need it to be peanut-free for school, like we do) and they are a great after-school snack, too.

Plus, they freeze beautifully, so you can store the extras away to have on hand. Never be without something pumpkin in the house! (See storage tips below.)

You might also like these classic pumpkin muffins. Or check out all of my healthy muffin recipes.

OK, let's get cooking.

A blue mixing bowl with ingredients layered in before being mixed together.
A spoon resting in a blue mixing bowl with a peanut butter pumpkin muffin batter.
Peanut butter pumpkin muffins, half with chocolate chips, in a muffin tin after baking.

I've got a few notes and tips coming up on how to make peanut butter pumpkin muffins.

If you want to jump on down to the recipe, simply scroll right on through the rest of the text. The recipe card is near the bottom of the page, above the comments section.

Ingredient Notes:

  • Flour: I use white whole wheat flour, but you could easily substitute the same amount of all-purpose flour. Or use a mix of all-purpose and whole wheat flour.
  • Peanut butter: Any brand will do, but I do recommend you use a creamy peanut butter for this recipe. I've made it with both a regular and a more natural peanut butter and both worked fine. You could also substitute almond butter or another nut butter if needed.
  • Honey: Honey is my go-to sweetener, but you could substitute maple syrup or agave syrup if you'd rather.
  • Chocolate chips: These are optional but add a fun flavor. You can use 1 cup of chocolate chips for the whole batch or you can split it, like I did. Spoon the plain batter into 6 muffin liners. Then mix in ½ cup of chocolate chips to the remaining batter in the bowl and pour that into the remaining 6 muffin liners to make a half-and-half batch.
Three chocolate chip peanut butter pumpkin muffins stacked together with a coffee cup to the side.

You could also add some extra peanut butter on top of these muffins when you serve them as a "frosting" if you like.

Or maybe some Nutella.

Also, if you'd rather bake this as a bread instead of as muffins, you definitely can.

Just pour the batter into a greased 9x5 bread pan and bake for 30-40 minutes, until a toothpick inserted in the middle comes out clean. Let cool completely on a wire rack.

Peanut butter pumpkin muffins | FamilyFoodontheTable.com

Back to the muffins though... As mentioned, these store and freeze great.

It's so helpful to make a batch and then have some on hand to pull out for busy days.

So let's talk about what to do with the extras.

Storage Tips:

  • These muffins will keep, covered, at room temperature for 4-5 days. After that, you can move them to the refrigerator, where they will keep for another 2-3 days.
  • You can also freeze the extras. Let the muffins cool completely. Place them in a freezer-safe ziptop bag (that’s labeled!) and freeze for up to 6 months.
  • Tip: I like to wrap them individually in aluminum foil before putting them into the bag. It adds an extra layer of protection from freezer burn and ice accumulation.
A hand holding up a chocolate chip muffin with a mug of coffee in the background.

I hope you will welcome fall with these peanut butter pumpkin muffins!

Enjoy!

XO,

Kathryn

Close up of homemade peanut butter pumpkin muffins on a white plate, with one studded with chocolate chips.
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4.29 from 14 votes

Peanut Butter Pumpkin Muffins

Whole wheat, naturally sweetened peanut butter pumpkin muffins - with optional chocolate chips - are a perfect healthy breakfast or snack.
Prep Time10 minutes mins
Cook Time20 minutes mins
Total Time30 minutes mins
Yield: 12 muffins

Ingredients

  • 1 ½ cups white whole wheat flour (see notes)
  • 1 teaspoon baking soda
  • ¼ teaspoon baking powder
  • ½ teaspoon salt
  • 2 large eggs
  • ½ cup peanut butter
  • ½ cup honey (see notes)
  • 1 teaspoon vanilla
  • 1 heaping cup pumpkin puree
  • 1 cup semisweet chocolate chips (optional, see notes for a half-and-half batch)

Instructions

  • Preheat the oven to 350. Prepare a muffin
  • Combine the flour, baking soda, baking powder and salt in a large bowl. Make a well in the center and add the eggs, peanut butter, honey, vanilla and pumpkin puree. Mix the wet ingredients until combined and then stir into the dry ingredients. The batter is thick!
  • Line a muffin tin with muffin liners - I also spray with cooking spray - and distribute the batter evenly.
  • Bake at 350 for 18-22 minutes, until a toothpick inserted in the center comes out clean.
  • Let cool and store at room temperature for 3-4 days or wrap in aluminum foil and store in the freezer for up to 3 months.

Notes

Flour: I use white whole wheat flour, but you could easily substitute the same amount of all-purpose flour. Or use a mix of all-purpose and whole wheat flour.
Peanut butter: Any brand will do, but I do recommend you use a creamy peanut butter for this recipe. I've made it with both a regular and a more natural peanut butter and both worked fine. You could also substitute almond butter or another nut butter if needed.
Honey: Honey is my go-to sweetener, but you could substitute maple syrup or agave syrup if you'd rather.
Chocolate chips: You can use 1 cup of chocolate chips for the whole batch or you can split it, like I did. I spooned the plain batter into six muffin liners. Then I mixed in ½ cup of chocolate chips to the remaining batter in the bowl and poured that into the remaining six muffin liners to make a half-and-half batch.
Storage Tips:
  • These muffins will keep, covered, at room temperature for 4-5 days. After that, you can move them to the refrigerator, where they will keep for another 2-3 days.
  • You can also freeze the extras. Let the muffins cool completely. Place them in a freezer-safe ziptop bag (that’s labeled!) and freeze for up to 6 months.
  • Tip: I like to wrap them individually in aluminum foil before putting them into the bag. It adds an extra layer of protection from freezer burn and ice accumulation.

Nutrition

Serving: 1serving | Calories: 177kcal | Carbohydrates: 27g | Protein: 6g | Fat: 7g | Saturated Fat: 1g | Polyunsaturated Fat: 4g | Cholesterol: 31mg | Sodium: 268mg | Fiber: 3g | Sugar: 13g
Tried this recipe?Leave a comment below or follow me on Instagram @familyfoodonthetable and tag me in your photo!
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Reader Interactions

Comments

  1. Cheyanne @ No Spoon Necessary

    September 07, 2015 at 7:44 pm

    I hear you, Kathryn and I agree! I love fall... I just take a hot minute letting go of summer fun! But, fall is my favorite season too- So cozy! Anyways, I love these muffins! Perfect for breakfast, snacking or dessert! I don't think I have ever had pumpkin with peanut butter... crazy right?! Obviously I am going to change that! Stat! And starting with these! Hope you and the family are had a great long weekend! Cheers, my dear!

    Reply
    • Kathryn

      September 08, 2015 at 10:26 pm

      I'm definitely a muffin any time of day or night person, too 🙂 And yes, you must get on the pumpkin-peanut butter pairing. Great combo! XO

      Reply
  2. cali

    September 24, 2015 at 9:14 pm

    Mmmmm i hear ya on fall! There's just something realllllly special about the atmosphere when it rolls around. These muffins look great! As you know, I found your pin on Foodie Friday! 🙂

    Reply
  3. cali

    September 24, 2015 at 9:23 pm

    oops. FriDIY, not Friday... LOL! It's been a long day.

    Reply
    • Kathryn

      September 24, 2015 at 10:20 pm

      A long day indeed... It was one of those when I kept thinking it was Friday only to look up long enough to realize, no, just Thursday. Sigh... 😉 Here's to a happy weekend!

      Reply
  4. Tania

    March 28, 2017 at 12:37 pm

    I've made these a few times and a few different ways. They always come out delicious. The main change is that I use almond flour instead of whole wheat flour. Though I really like whole wheat, it doesn't always love me. Neither does white flour. The other change I've made, when I don't have fresh pumpkin, is using banana instead. My family loves this recipe as well. It is here to stay.

    Reply
    • Kathryn

      March 28, 2017 at 6:28 pm

      Hi Tania! I'm so glad to hear these are a hit for your family - thanks so much for sharing! And that's great to know that the various substitutions have worked, too 😊

      Reply
  5. Misty

    April 26, 2022 at 8:22 pm

    I just made these and they’re delicious but I would have added a bit more honey and a little brown sugar.

    Reply
    • Kathryn Doherty

      April 27, 2022 at 7:31 am

      I'm glad you enjoyed them! These muffins were designed to be a bit lighter and naturally sweetened, but you could certainly try adding some brown sugar. Or you could make a streusel topping to put on them. You can also serve them with some honey drizzled over if you'd like.

      Reply
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Hi there! I’m Kathryn Doherty, a cookbook author, mom of two, and devoted food and home cooking nut. I’ve got lots of easy recipes to help you get delicious food on the table for your family!

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